Antenna Season Report Notebook¶

Josh Dillon, Last Revised January 2022

This notebook examines an individual antenna's performance over a whole season. This notebook parses information from each nightly rtp_summarynotebook (as saved to .csvs) and builds a table describing antenna performance. It also reproduces per-antenna plots from each auto_metrics notebook pertinent to the specific antenna.

In [1]:
import os
from IPython.display import display, HTML
display(HTML("<style>.container { width:100% !important; }</style>"))
In [2]:
# If you want to run this notebook locally, copy the output of the next cell into the next line of this cell.
# antenna = "004"
# csv_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/_rtp_summary_'
# auto_metrics_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/auto_metrics_inspect'
# os.environ["ANTENNA"] = antenna
# os.environ["CSV_FOLDER"] = csv_folder
# os.environ["AUTO_METRICS_FOLDER"] = auto_metrics_folder
In [3]:
# Use environment variables to figure out path to the csvs and auto_metrics
antenna = str(int(os.environ["ANTENNA"]))
csv_folder = os.environ["CSV_FOLDER"]
auto_metrics_folder = os.environ["AUTO_METRICS_FOLDER"]
print(f'antenna = "{antenna}"')
print(f'csv_folder = "{csv_folder}"')
print(f'auto_metrics_folder = "{auto_metrics_folder}"')
antenna = "321"
csv_folder = "/home/obs/src/H6C_Notebooks/_rtp_summary_"
auto_metrics_folder = "/home/obs/src/H6C_Notebooks/auto_metrics_inspect"
In [4]:
display(HTML(f'<h1 style=font-size:50px><u>Antenna {antenna} Report</u><p></p></h1>'))

Antenna 321 Report

In [5]:
import numpy as np
import pandas as pd
pd.set_option('display.max_rows', 1000)
import glob
import re
from hera_notebook_templates.utils import status_colors, Antenna
In [6]:
# load csvs and auto_metrics htmls in reverse chronological order
csvs = sorted(glob.glob(os.path.join(csv_folder, 'rtp_summary_table*.csv')))[::-1]
print(f'Found {len(csvs)} csvs in {csv_folder}')
auto_metric_htmls = sorted(glob.glob(auto_metrics_folder + '/auto_metrics_inspect_*.html'))[::-1]
print(f'Found {len(auto_metric_htmls)} auto_metrics notebooks in {auto_metrics_folder}')
Found 13 csvs in /home/obs/src/H6C_Notebooks/_rtp_summary_
Found 12 auto_metrics notebooks in /home/obs/src/H6C_Notebooks/auto_metrics_inspect
In [7]:
# Per-season options
mean_round_modz_cut = 4
dead_cut = 0.4
crossed_cut = 0.0

def jd_to_summary_url(jd):
    return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/_rtp_summary_/rtp_summary_{jd}.html'

def jd_to_auto_metrics_url(jd):
    return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/auto_metrics_inspect/auto_metrics_inspect_{jd}.html'

Load relevant info from summary CSVs¶

In [8]:
this_antenna = None
jds = []

# parse information about antennas and nodes
for csv in csvs:
    df = pd.read_csv(csv)
    for n in range(len(df)):
        # Add this day to the antenna
        row = df.loc[n]
        if isinstance(row['Ant'], str) and '<a href' in row['Ant']:
            antnum = int(row['Ant'].split('</a>')[0].split('>')[-1]) # it's a link, extract antnum
        else:
            antnum = int(row['Ant'])
        if antnum != int(antenna):
            continue
        
        if np.issubdtype(type(row['Node']), np.integer):
            row['Node'] = str(row['Node'])
        if type(row['Node']) == str and row['Node'].isnumeric():
            row['Node'] = 'N' + ('0' if len(row['Node']) == 1 else '') + row['Node']
            
        if this_antenna is None:
            this_antenna = Antenna(row['Ant'], row['Node'])
        jd = [int(s) for s in re.split('_|\.', csv) if s.isdigit()][-1]
        jds.append(jd)
        this_antenna.add_day(jd, row)
        break
In [9]:
# build dataframe
to_show = {'JDs': [f'<a href="{jd_to_summary_url(jd)}" target="_blank">{jd}</a>' for jd in jds]}
to_show['A Priori Status'] = [this_antenna.statuses[jd] for jd in jds]

df = pd.DataFrame(to_show)

# create bar chart columns for flagging percentages:
bar_cols = {}
bar_cols['Auto Metrics Flags'] = [this_antenna.auto_flags[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jee)'] = [this_antenna.dead_flags_Jee[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jnn)'] = [this_antenna.dead_flags_Jnn[jd] for jd in jds]
bar_cols['Crossed Fraction in Ant Metrics'] = [this_antenna.crossed_flags[jd] for jd in jds]
bar_cols['Flag Fraction Before Redcal'] = [this_antenna.flags_before_redcal[jd] for jd in jds]
bar_cols['Flagged By Redcal chi^2 Fraction'] = [this_antenna.redcal_flags[jd] for jd in jds]
for col in bar_cols:
    df[col] = bar_cols[col]

z_score_cols = {}
z_score_cols['ee Shape Modified Z-Score'] = [this_antenna.ee_shape_zs[jd] for jd in jds]
z_score_cols['nn Shape Modified Z-Score'] = [this_antenna.nn_shape_zs[jd] for jd in jds]
z_score_cols['ee Power Modified Z-Score'] = [this_antenna.ee_power_zs[jd] for jd in jds]
z_score_cols['nn Power Modified Z-Score'] = [this_antenna.nn_power_zs[jd] for jd in jds]
z_score_cols['ee Temporal Variability Modified Z-Score'] = [this_antenna.ee_temp_var_zs[jd] for jd in jds]
z_score_cols['nn Temporal Variability Modified Z-Score'] = [this_antenna.nn_temp_var_zs[jd] for jd in jds]
z_score_cols['ee Temporal Discontinuties Modified Z-Score'] = [this_antenna.ee_temp_discon_zs[jd] for jd in jds]
z_score_cols['nn Temporal Discontinuties Modified Z-Score'] = [this_antenna.nn_temp_discon_zs[jd] for jd in jds]
for col in z_score_cols:
    df[col] = z_score_cols[col]

ant_metrics_cols = {}
ant_metrics_cols['Average Dead Ant Metric (Jee)'] = [this_antenna.Jee_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Dead Ant Metric (Jnn)'] = [this_antenna.Jnn_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Crossed Ant Metric'] = [this_antenna.crossed_metrics[jd] for jd in jds]
for col in ant_metrics_cols:
    df[col] = ant_metrics_cols[col]

redcal_cols = {}
redcal_cols['Median chi^2 Per Antenna (Jee)'] = [this_antenna.Jee_chisqs[jd] for jd in jds]
redcal_cols['Median chi^2 Per Antenna (Jnn)'] = [this_antenna.Jnn_chisqs[jd] for jd in jds]   
for col in redcal_cols:
    df[col] = redcal_cols[col]

# style dataframe
table = df.style.hide_index()\
          .applymap(lambda val: f'background-color: {status_colors[val]}' if val in status_colors else '', subset=['A Priori Status']) \
          .background_gradient(cmap='viridis', vmax=mean_round_modz_cut * 3, vmin=0, axis=None, subset=list(z_score_cols.keys())) \
          .background_gradient(cmap='bwr_r', vmin=dead_cut-.25, vmax=dead_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
          .background_gradient(cmap='bwr_r', vmin=crossed_cut-.25, vmax=crossed_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
          .background_gradient(cmap='plasma', vmax=4, vmin=1, axis=None, subset=list(redcal_cols.keys())) \
          .applymap(lambda val: 'font-weight: bold' if val < dead_cut else '', subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
          .applymap(lambda val: 'font-weight: bold' if val < crossed_cut else '', subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
          .applymap(lambda val: 'font-weight: bold' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
          .applymap(lambda val: 'color: red' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
          .bar(subset=list(bar_cols.keys()), vmin=0, vmax=1) \
          .format({col: '{:,.4f}'.format for col in z_score_cols}) \
          .format({col: '{:,.4f}'.format for col in ant_metrics_cols}) \
          .format('{:,.2%}', na_rep='-', subset=list(bar_cols.keys())) \
          .set_table_styles([dict(selector="th",props=[('max-width', f'70pt')])]) 

Table 1: Per-Night RTP Summary Info For This Atenna¶

This table reproduces each night's row for this antenna from the RTP Summary notebooks. For more info on the columns, see those notebooks, linked in the JD column.

In [10]:
display(HTML(f'<h2>Antenna {antenna}, Node {this_antenna.node}:</h2>'))
HTML(table.render(render_links=True, escape=False))

Antenna 321, Node N02:

Out[10]:
JDs A Priori Status Auto Metrics Flags Dead Fraction in Ant Metrics (Jee) Dead Fraction in Ant Metrics (Jnn) Crossed Fraction in Ant Metrics Flag Fraction Before Redcal Flagged By Redcal chi^2 Fraction ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score Average Dead Ant Metric (Jee) Average Dead Ant Metric (Jnn) Average Crossed Ant Metric Median chi^2 Per Antenna (Jee) Median chi^2 Per Antenna (Jnn)
2459826 not_connected 100.00% 100.00% 100.00% 0.00% 100.00% 0.00% 6.308227 4.268597 14.842320 13.395798 24.354757 20.077210 40.622880 40.403155 0.0766 0.0605 0.0319 0.000000 0.000000
2459825 not_connected 100.00% 100.00% 100.00% 0.00% 100.00% 0.00% 6.767937 4.063391 10.949555 9.675501 12.311117 10.128865 5.664368 5.415483 0.0992 0.0699 0.0444 0.000000 0.000000
2459824 not_connected 100.00% 100.00% 100.00% 0.00% 100.00% 0.00% 1.961254 1.082142 14.602352 13.001965 10.001879 10.276851 31.376781 30.798655 0.0960 0.0904 0.0377 0.000000 0.000000
2459823 not_connected 100.00% 100.00% 100.00% 0.00% 100.00% 0.00% nan nan inf inf nan nan nan nan nan nan nan 0.000000 0.000000
2459822 not_connected 100.00% 100.00% 100.00% 0.00% 100.00% 0.00% 42.574037 42.371013 inf inf 3894.529461 3894.148523 5149.357315 5148.737724 nan nan nan 0.000000 0.000000
2459821 not_connected 100.00% 100.00% 100.00% 0.00% 100.00% 0.00% 9.792353 7.958784 13.612914 12.544873 12.118183 9.823380 2.931057 2.935396 0.1009 0.0735 0.0460 0.000000 0.000000
2459820 not_connected 100.00% 0.00% 10.74% 0.00% 100.00% 0.00% 4.655264 2.975713 16.127051 14.313974 33.955889 27.522027 40.986733 40.273796 0.6823 0.5426 0.4621 0.000000 0.000000
2459817 not_connected 100.00% 0.00% 51.08% 0.00% 100.00% 0.00% 9.676300 7.489971 11.189527 10.221069 18.197908 15.506102 6.107616 5.961099 0.6646 0.4069 0.4943 0.000000 0.000000
2459816 not_connected 100.00% 0.00% 18.87% 0.00% 100.00% 0.00% 5.090103 3.815301 15.705513 13.979477 23.914625 21.132749 43.929134 42.633822 0.7900 0.4413 0.6434 0.000000 0.000000
2459815 not_connected 100.00% 0.00% 53.76% 0.00% 100.00% 0.00% 9.005730 7.094535 12.592213 11.528141 22.662342 20.181137 43.392374 43.747550 0.6467 0.4081 0.4888 0.000000 0.000000
2459814 not_connected 0.00% - - - - - nan nan nan nan nan nan nan nan nan nan nan nan nan
2459813 not_connected 100.00% 100.00% 100.00% 0.00% 100.00% 0.00% nan nan inf inf nan nan nan nan nan nan nan 0.000000 0.000000

Load antenna metric spectra and waterfalls from auto_metrics notebooks.¶

In [11]:
htmls_to_display = []
for am_html in auto_metric_htmls:
    html_to_display = ''
    # read html into a list of lines
    with open(am_html) as f:
        lines = f.readlines()
    
    # find section with this antenna's metric plots and add to html_to_display
    jd = [int(s) for s in re.split('_|\.', am_html) if s.isdigit()][-1]
    try:
        section_start_line = lines.index(f'<h2>Antenna {antenna}: {jd}</h2>\n')
    except ValueError:
        continue
    html_to_display += lines[section_start_line].replace(str(jd), f'<a href="{jd_to_auto_metrics_url(jd)}" target="_blank">{jd}</a>')
    for line in lines[section_start_line + 1:]:
        html_to_display += line
        if '<hr' in line:
            htmls_to_display.append(html_to_display)
            break

Figure 1: Antenna autocorrelation metric spectra and waterfalls.¶

These figures are reproduced from auto_metrics notebooks. For more info on the specific plots and metrics, see those notebooks (linked at the JD). The most recent 100 days (at most) are shown.

In [12]:
for i, html_to_display in enumerate(htmls_to_display):
    if i == 100:
        break
    display(HTML(html_to_display))

Antenna 321: 2459826

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Temporal Discontinuties 40.622880 4.268597 6.308227 13.395798 14.842320 20.077210 24.354757 40.403155 40.622880

Antenna 321: 2459825

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Temporal Variability 12.311117 4.063391 6.767937 9.675501 10.949555 10.128865 12.311117 5.415483 5.664368

Antenna 321: 2459824

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Temporal Discontinuties 31.376781 1.961254 1.082142 14.602352 13.001965 10.001879 10.276851 31.376781 30.798655

Antenna 321: 2459823

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
321 N02 not_connected nn Shape nan nan nan inf inf nan nan nan nan

Antenna 321: 2459822

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Power inf 42.574037 42.371013 inf inf 3894.529461 3894.148523 5149.357315 5148.737724

Antenna 321: 2459821

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Power 13.612914 7.958784 9.792353 12.544873 13.612914 9.823380 12.118183 2.935396 2.931057

Antenna 321: 2459820

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Temporal Discontinuties 40.986733 4.655264 2.975713 16.127051 14.313974 33.955889 27.522027 40.986733 40.273796

Antenna 321: 2459817

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Temporal Variability 18.197908 9.676300 7.489971 11.189527 10.221069 18.197908 15.506102 6.107616 5.961099

Antenna 321: 2459816

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
321 N02 not_connected ee Temporal Discontinuties 43.929134 3.815301 5.090103 13.979477 15.705513 21.132749 23.914625 42.633822 43.929134

Antenna 321: 2459815

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
321 N02 not_connected nn Temporal Discontinuties 43.747550 7.094535 9.005730 11.528141 12.592213 20.181137 22.662342 43.747550 43.392374